Discovery of microbial natural products by activation of silent biosynthetic gene clusters, Nat Rev Micro, vol.13, pp.509-523, 2015. ,
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters, Nucleic Acids Res, vol.45, pp.555-559, 2017. ,
Minimum information about a biosynthetic gene cluster, Nat Chem Biol, vol.11, pp.625-631, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01430728
Recent developments towards the heterologous expression of complex bacterial natural product biosynthetic pathways, Curr Opin in Biotech, vol.16, pp.594-606, 2005. ,
, , vol.8, 2018.
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature, Nat Prod Rep, vol.30, pp.108-160, 2013. ,
Lasso peptides: structure, function, biosynthesis, and engineering, Nat Prod Rep, vol.29, pp.996-1006, 2012. ,
Bacterial Strategies to Make and Maintain Bioactive Entangled Scaffolds in SpringerBriefs in Microbiology, 2015. ,
Lasso peptides: an intriguing class of bacterial natural products, Acc Chem Res, vol.48, pp.1909-1919, 2015. ,
Lariatins, antimycobacterial peptides produced by Rhodococcus sp. K01-B0171, have a lasso structure, J Am Chem Soc, vol.128, pp.7486-7491, 2006. ,
Siamycins I and II, new anti-HIV-1peptides: II. Sequence analysis and structure determination of siamycin I, J Antibiot, vol.48, pp.1515-1517, 1995. ,
Lassomycin, a ribosomally synthesized cyclic peptide, kills mycobacterium tuberculosis by targeting the ATPdependent protease ClpC1P1P2, Chem Biol, vol.21, pp.509-518, 2014. ,
Structure, bioactivity, and resistance mechanism of streptomonomicin, an unusual lasso Peptide from an understudied halophilic actinomycete, Chem Biol, vol.22, pp.241-250, 2015. ,
Sungsanpin, a lasso peptide from a deep-sea Streptomycete, J Nat Prod, vol.76, pp.873-879, 2013. ,
Chaxapeptin, a lasso peptide from extremotolerant Streptomyces leeuwenhoekii Strain C58 from the hyperarid atacama desert, J Org Chem, vol.80, pp.10252-10260, 2015. ,
Anantin-a peptide antagonist of the atrial natriuretic factor (ANF). I. Producing organism, fermentation, isolation and biological activity, J Antibiot, vol.44, pp.164-171, 1991. ,
BI-32169, a bicyclic 19-peptide with strong glucagon receptor antagonist activity from Streptomyces sp, J Nat Prod, vol.67, pp.1528-1531, 2004. ,
Siamycin attenuates fsr quorum sensing mediated by a gelatinase biosynthesis-activating pheromone in Enterococcus faecalis, J Bacteriol, vol.189, pp.1358-1365, 2007. ,
Anti-HIV siamycin I directly inhibits autophosphorylation activity of the bacterial FsrC quorum sensor and other ATPdependent enzyme activities, FEBS Lett, vol.585, pp.2660-2664, 2011. ,
A new genome-mining tool redefines the lasso peptide biosynthetic landscape, Nat Chem Biol, vol.13, pp.470-478, 2017. ,
A prevalent peptide-binding domain guides ribosomal natural product biosynthesis, Nat Chem Biol, vol.11, pp.564-570, 2015. ,
Precursor-centric genome-mining approach for lasso peptide discovery, Proc Natl Acad Sci, vol.109, pp.15223-15231, 2012. ,
Lasso peptides from proteobacteria: Genome mining employing heterologous expression and mass spectrometry, Biopolymers, vol.100, pp.527-542, 2013. ,
A mass spectrometry-guided genome mining approach for natural product peptidogenomics, Nat Chem Biol, vol.7, pp.794-802, 2011. ,
The role of a conserved threonine residue in the leader peptide of lasso peptide precursors, Chem Commun (Camb), vol.48, pp.1880-1882, 2012. ,
Isolation of a new antibacterial peptide actinokineosin from Actinokineospora spheciospongiae based on genome mining, Lett Appl Microbiol, vol.64, pp.150-157, 2017. ,
Characterization of sviceucin from Streptomyces provides insight into enzyme exchangeability and disulfide bond formation in lasso peptides, ACS Chem Biol, vol.10, pp.2641-2650, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01430638
Isolation of a new antibacterial peptide achromosin from Streptomyces achromogenes subsp. achromogenes based on genome mining, J Antibiot, vol.70, pp.208-211, 2017. ,
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation, Antonie van Leeuwenhoek, vol.110, pp.1705-1717, 2017. ,
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters, Nucleic Acids Res, vol.43, pp.237-280, 2015. ,
Activation of chloramphenicol biosynthesis in Streptomyces venezuelae ATCC 10712 by ethanol shock: insights from the promoter fusion studies, Microb Cell Fact, vol.15, p.85, 2016. ,
Hierarchical control on polyene macrolide biosynthesis: PimR modulates pimaricin production via the PAS-LuxR transcriptional activator PimM, PLoS ONE, vol.7, p.38536, 2012. ,
Regulation of valanimycin biosynthesis in Streptomyces viridifaciens: characterization of VlmI as a Streptomyces antibiotic regulatory protein (SARP), Microbiology, vol.156, pp.472-483, 2010. ,
Antibiotic overproduction in Streptomyces coelicolor A3(2) mediated by phosphofructokinase deletion, J Biol Chem, vol.283, pp.25186-25199, 2008. ,
Growth-phase-dependent expression of the cyclopeptide antibiotic microcin J25, J Bacteriol, vol.183, pp.1755-1764, 2001. ,
Topoisomer differentiation of molecular knots by FTICR MS: lessons from class II lasso peptides, J Am Soc Mass Spectrom, vol.22, pp.467-479, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00578442
General rules of fragmentation evidencing lasso structures in CID and ETD, Analyst, vol.143, pp.1157-1170, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02024508
Sequence determinants governing the topology and biological activity of a lasso peptide, microcin J25, Chembiochem, vol.13, pp.371-380, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00678535
Ion mobility-mass spectrometry of lasso peptides: signature of a rotaxane topology, Anal Chem, vol.87, pp.1166-1172, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01186535
Signatures of mechanically interlocked topology of lasso peptides by ion mobility-mass spectrometry: lessons from a collection of representatives, J Am Soc Mass Spectrom, vol.28, pp.315-322, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02046284
Low-molecular-weight post-translationally modified microcins, Mol Microbiol, vol.65, pp.1380-1394, 2007. ,
PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin, Proc Natl Acad Sci, vol.100, pp.1541-1546, 2003. ,
Structure-activity analysis of Gram-positive bacterium-producing lasso peptides with anti-mycobacterial activity, Sci Rep, vol.6, p.30375, 2016. ,
Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes, J Ind Micro Biotech, vol.43, pp.343-370, 2016. ,
Mutations of bacterial RNA polymerase leading to resistance to microcin J25, J Biol Chem, vol.277, pp.50867-50875, 2002. ,
The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase, J Mol Biol, vol.412, pp.842-848, 2011. ,
, , vol.8, 2018.
Feed-forward regulation of microbisporicin biosynthesis in Microbispora corallina, J Bacteriol, vol.193, pp.3064-3071, 2011. ,
Heterologous expression of the thiopeptide antibiotic GE2270 from Planobispora rosea ATCC 53733 in Streptomyces coelicolor requires deletion of ribosomal genes from the expression construct, PLoS ONE, vol.9, p.90499, 2014. ,
, Practical Streptomyces Genetics, vol.613, 2000.
High efficiency conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA restricting Streptomycetes, FEMS Microbiol Lett, vol.155, 1997. ,
Enzymatic assembly of DNA molecules up to several hundred kilobases, Nat Methods, vol.6, pp.343-345, 2009. ,
Generation of novel landomycins M and O through targeted gene disruption, Chembiochem, vol.6, pp.675-678, 2005. ,
j5 DNA assembly design automation software, ACS Synth Biol, vol.1, pp.14-21, 2012. ,
Proposal for a common nomenclature for sequence ions in mass spectra of peptides, Biomed Mass Spec, vol.11, p.601, 1984. ,
Appendix 5. Nomenclature for peptide fragment ions (positive ions), Methods in Enzymol, vol.193, pp.886-887, 1990. ,
Ion mobility mass spectrometry of peptide ions: effects of drift gas and calibration strategies, Anal Chem, vol.84, pp.7124-7130, 2012. ,